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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
61
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
94
DNA binding
67
Transcription
47
DNA accessibility
3D chromatin structure
2
DNA methylation
Target of assay
67
histone
67
histone modification
43
broad histone mark
24
narrow histone mark
20
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
40
October, 2019
35
February, 2023
9
July, 2019
6
August, 2021
3
February, 2020
2
March, 2020
Available data
180
bam
148
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
68
tsv
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
fastq
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
211
Homo sapiens
Biosample type
127
tissue
66
cell line
18
primary cell
Organ
574
connective tissue
455
pancreas
445
adipose tissue
360
heart
321
liver
275
kidney
241
epithelium
226
brain
212
vasculature
211
blood vessel
159
bone element
137
artery
82
limb
57
eye
42
musculature of body
41
nerve
20
lung
16
skeleton
16
vein
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
211
AMP
Genome assembly (visualization)
176
GRCh38
141
hg19
Lab
211
AMP-T2D consortium
assay_slims!
3D chromatin structure
files.file_type!
bed broadPeak
fastq
BIOSAMPLE
ASSAY
211 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
36
tibial artery
23
1
1
aorta
13
1
4
2
1
thoracic aorta
16
2
1
ascending aorta
16
2
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
15
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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