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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
2
pCHi-C
1
FAIRE-seq
Assay category
15
DNA binding
3D chromatin structure
1
DNA accessibility
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
2
control
Date released
16
October, 2019
2
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
tsv
1
tar
Organism
18
Homo sapiens
Biosample type
16
primary cell
2
tissue
Organ
916
pancreas
724
liver
673
connective tissue
494
epithelium
488
adipose tissue
360
heart
275
kidney
236
brain
214
vasculature
212
blood vessel
159
bone element
137
artery
82
limb
69
blood
69
bodily fluid
57
eye
44
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
11
hg19
10
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
18 results
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Clear Filters
ChIP-seq
pCHi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
15
1
tissue
bladder (urinary bladder)
1
small intestine
1
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