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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
48
DNA binding
12
Transcription
4
DNA accessibility
3D chromatin structure
2
DNA methylation
Target of assay
31
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
14
July, 2019
February, 2020
11
October, 2019
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
243
bam
219
bigWig
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
14
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
68
Homo sapiens
Biosample type
61
tissue
7
primary cell
Organ
720
pancreas
606
connective tissue
476
adipose tissue
365
epithelium
329
liver
196
heart
168
kidney
151
bone element
95
vasculature
93
blood vessel
68
brain
65
artery
28
musculature of body
27
eye
23
embryo
23
limb
20
lung
15
blood
15
bodily fluid
15
nerve
11
spleen
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
20
hg19
16
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
1
missing controlled_by
assay_slims!
3D chromatin structure
files.file_type!
bed narrowPeak
lab.title!
Bing Ren, UCSD
month_released!
February, 2020
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
9
1
1
1
cingulate gyrus
7
layer of hippocampus
6
cerebellum (Hemisphere)
2
1
1
substantia nigra
4
+ See 19 more…
primary cell
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
See all biosamples
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