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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
31
total RNA-seq
1
single cell RNA-seq
Assay category
97
DNA binding
32
Transcription
Target of assay
75
control
14
histone
14
histone modification
9
narrow histone mark
8
transcription factor
5
broad histone mark
2
RNA binding protein
Date released
692
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
210
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
120
October, 2019
93
July, 2019
93
November, 2017
59
September, 2020
51
March, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
23
February, 2018
23
May, 2019
22
December, 2017
22
November, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
4
August, 2018
4
December, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
494
bam
432
bigWig
427
fastq
bed narrowPeak
347
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
31
tsv
3
tar
1
csv
Organism
129
Homo sapiens
Biosample type
74
cell line
30
primary cell
25
tissue
Organ
71
liver
28
epithelium
27
brain
26
pancreas
3
blood
3
bodily fluid
2
vasculature
1
blood vessel
1
spleen
Project
129
AMP
Genome assembly (visualization)
53
hg19
31
GRCh38
Lab
129
AMP-T2D consortium
Audit category:
2
inconsistent control read length
assay_slims!
3D chromatin structure
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
129 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
cell line
HepG2
66
5
GM12878
3
primary cell
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic ductal cell
4
pancreatic acinar cell
2
astrocyte of the cerebellum
1
+ See 3 more…
tissue
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
middle frontal area 46
3
+ See 2 more…
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