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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
16
ATAC-seq
4
pCHi-C
2
ChIP-seq
Assay category
17
Transcription
16
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
21
October, 2019
17
February, 2023
1
February, 2020
Available data
18
bed narrowPeak
3
bam
3
bed bed3+
3
bed broadPeak
bigBed broadPeak
3
bigBed narrowPeak
3
bigWig
3
tsv
Organism
39
Homo sapiens
Biosample type
39
tissue
Organ
781
pancreas
724
liver
674
connective tissue
489
adipose tissue
360
heart
epithelium
275
kidney
245
brain
214
vasculature
212
blood vessel
159
bone element
137
artery
82
limb
69
blood
69
bodily fluid
57
eye
57
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
15
hg19
Lab
39
AMP-T2D consortium
assay_slims!
3D chromatin structure
files.file_type!
bigBed broadPeak
lab.title!
Klaus Kaestner, Upenn
organ_slims!
epithelium
BIOSAMPLE
ASSAY
39 results
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total RNA-seq
ATAC-seq
pCHi-C
ChIP-seq
tissue
islet of Langerhans
14
1
4
2
retina
3
15
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