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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
6
total RNA-seq
3
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
26
DNA binding
9
Transcription
3D chromatin structure
4
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
17
August, 2017
6
July, 2019
5
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bigWig
51
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
fastq
1
txt
Organism
75
Homo sapiens
Biosample type
65
tissue
10
primary cell
Organ
415
pancreas
330
kidney
284
heart
279
liver
212
epithelium
149
brain
135
vasculature
132
blood vessel
107
connective tissue
97
limb
75
musculature of body
69
artery
58
eye
50
adipose tissue
35
nerve
20
lung
18
ureter
14
vein
10
embryo
9
blood
9
bodily fluid
9
bone element
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
58
hg19
48
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
assay_slims!
3D chromatin structure
files.file_type!
fastq
month_released!
February, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
75 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
2
1
1
1
1
muscle of leg
13
5
1
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
1
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