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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
ChIP-seq
189
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
whole genome sequencing assay
Assay category
466
DNA binding
192
Transcription
28
DNA accessibility
7
DNA methylation
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
82
recombinant protein
80
control
58
RNA binding protein
45
histone modification
44
histone
24
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
144
May, 2020
63
December, 2017
53
November, 2018
40
May, 2022
34
August, 2017
30
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
680
bam
621
bigWig
464
fastq
440
bed narrowPeak
358
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
vcf
Organism
698
Homo sapiens
Biosample type
385
cell line
289
tissue
15
in vitro differentiated cells
9
primary cell
Organ
867
pancreas
698
liver
458
epithelium
345
kidney
324
heart
206
connective tissue
165
brain
165
vasculature
159
blood vessel
112
limb
97
adipose tissue
75
artery
75
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
698
AMP
Genome assembly (visualization)
578
hg19
499
GRCh38
Lab
628
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
assay_slims!
3D chromatin structure
files.file_type!
tagAlign
month_released!
February, 2021
September, 2020
BIOSAMPLE
ASSAY
698 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
RRBS
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
366
14
1
2
1
1
tissue
liver
75
167
20
2
3
1
1
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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