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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
ChIP-seq
23
ATAC-seq
20
total RNA-seq
6
DNase-seq
5
WGBS
2
RRBS
2
STARR-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
470
DNA binding
29
DNA accessibility
21
Transcription
7
DNA methylation
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
63
December, 2017
54
August, 2017
50
May, 2020
40
May, 2022
37
November, 2018
25
August, 2021
6
October, 2019
3
February, 2021
2
July, 2019
2
June, 2019
Available data
599
bam
540
bigWig
382
fastq
360
bed narrowPeak
277
bigBed narrowPeak
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
1
vcf
Organism
531
Homo sapiens
Biosample type
302
cell line
206
tissue
15
in vitro differentiated cells
8
primary cell
Organ
531
liver
520
pancreas
360
epithelium
322
kidney
257
brain
222
heart
205
connective tissue
163
vasculature
157
blood vessel
111
limb
101
bone element
90
adipose tissue
83
artery
81
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
20
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
531
AMP
Genome assembly (visualization)
382
hg19
288
GRCh38
Lab
470
AMP-T2D consortium
40
Karen Mohlke, UNC
21
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
3D chromatin structure
files.file_type!
tsv
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
531 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
296
1
1
2
1
1
tissue
liver
145
20
20
2
3
1
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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