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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
single cell RNA-seq
96
ATAC-seq
93
total RNA-seq
43
ChIP-seq
28
snATAC-seq
5
STARR-seq
2
Capture-C
1
RNA microarray
Assay category
233
Transcription
124
DNA accessibility
43
DNA binding
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
312
August, 2021
292
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
96
May, 2022
94
December, 2017
94
July, 2019
81
November, 2018
80
April, 2019
47
September, 2023
41
March, 2020
40
May, 2024
40
September, 2020
39
February, 2018
34
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
4
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
126
bed narrowPeak
122
tsv
67
bigWig
64
xls
58
txt
54
zippedFastqFolder
49
bam
24
tagAlign
6
bed bed3+
vcf
Organism
407
Homo sapiens
Biosample type
268
tissue
58
primary cell
42
in vitro differentiated cells
40
cell line
Organ
129
kidney
pancreas
92
heart
86
epithelium
73
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
musculature of body
1
adipose tissue
Project
354
AMP
54
HPAP
Genome assembly (visualization)
105
GRCh38
79
hg19
Lab
151
AMP-T2D consortium
127
Katalin Susztak, Upenn
54
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
32
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
3D chromatin structure
files.file_type!
vcf
organ_slims!
pancreas
BIOSAMPLE
ASSAY
408 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
RNA microarray
tissue
kidney
8
64
49
6
liver
20
20
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
primary cell
Langerhans cell
33
21
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
18
2
H1-hESC
8
HEK293T
2
Synthesized DNA
1
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