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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
6
WGBS
2
ATAC-seq
Assay category
61
Transcription
6
DNA methylation
2
DNA accessibility
Date released
51
May, 2021
May, 2020
10
August, 2021
6
February, 2021
1
March, 2019
1
October, 2017
Available data
274
bed narrowPeak
265
bigWig
195
fastq
160
bam
153
zippedFastqFolder
84
tagAlign
67
tsv
66
txt
64
xls
4
bed bed3+
3
bed bedgraph
2
bed broadPeak
1
vcf
Organism
69
Homo sapiens
Biosample type
57
primary cell
9
cell line
3
tissue
Organ
9
liver
9
pancreas
6
epithelium
Project
51
T1D
12
AMP
6
HPAP
Genome assembly (visualization)
52
GRCh38
52
hg19
Lab
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
assay_slims!
3D chromatin structure
lab.title!
AMP-T2D consortium
month_released!
May, 2020
BIOSAMPLE
ASSAY
69 results
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total RNA-seq
WGBS
ATAC-seq
primary cell
monocyte
51
pancreatic alpha cell
6
cell line
HepG2
9
tissue
islet of Langerhans
1
2
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