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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
64
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
93
DNA binding
66
DNA accessibility
Target of assay
60
transcription factor
31
histone
31
histone modification
16
narrow histone mark
15
broad histone mark
12
RNA binding protein
10
chromatin remodeller
7
recombinant protein
Date released
64
August, 2021
27
December, 2018
18
April, 2019
16
October, 2019
15
January, 2019
12
November, 2018
4
May, 2019
2
June, 2019
1
July, 2019
Available data
237
bed narrowPeak
204
bam
186
bigWig
158
bigBed narrowPeak
78
bed bed3+
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
60
fastq
24
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
Organism
159
Homo sapiens
Biosample type
85
tissue
62
cell line
12
primary cell
Organ
384
liver
195
pancreas
161
heart
156
brain
131
epithelium
118
blood vessel
118
vasculature
105
kidney
70
artery
65
connective tissue
56
limb
54
blood
54
bodily fluid
29
eye
25
nerve
14
embryo
14
musculature of body
13
spleen
11
vein
10
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
159
AMP
Genome assembly (visualization)
158
GRCh38
95
hg19
Lab
95
AMP-T2D consortium
64
Katalin Susztak, Upenn
Audit category:
11
inconsistent ontology term
1
inconsistent control
assay_slims!
3D chromatin structure
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
159 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
20
64
1
cell line
GM12878
54
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
primary cell
epithelial cell of proximal tubule
8
kidney epithelial cell
4
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