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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
120
DNA binding
72
Transcription
1
DNA accessibility
Target of assay
66
control
54
histone
54
histone modification
33
broad histone mark
21
narrow histone mark
Date released
92
February, 2021
65
August, 2021
47
August, 2017
23
May, 2020
21
November, 2017
9
October, 2019
8
October, 2017
7
May, 2022
4
February, 2023
1
May, 2021
1
October, 2022
Available data
3381
bam
bigWig
1812
bed narrowPeak
1600
tsv
1346
fastq
1037
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
266
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
4
tar
3
bedpe bed3+
2
ibed
1
tagAlign bed3+
1
vcf
Organism
276
Homo sapiens
Biosample type
251
tissue
22
in vitro differentiated cells
4
cell line
1
primary cell
Organ
88
bone element
62
kidney
44
liver
36
brain
21
connective tissue
11
pancreas
7
adipose tissue
4
skeleton
3
musculature of body
2
artery
2
blood vessel
2
epithelium
2
heart
2
vasculature
Project
278
AMP
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
215
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
Audit category:
1
missing controlled_by
assay_slims!
3D chromatin structure
files.file_type!
bigWig
month_released!
September, 2017
BIOSAMPLE
ASSAY
278 results
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ChIP-seq
RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
liver
43
islet of Langerhans
3
6
brain
8
+ See 21 more…
in vitro differentiated cells
adipocyte
14
neural progenitor cell
7
pancreatic PP cell
1
cell line
smooth muscle cell of the coronary artery
2
MIN6
1
iPSC derived cell line
1
primary cell
hepatocyte
1
See all biosamples
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