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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
Assay category
39
DNA binding
34
DNA accessibility
8
Transcription
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
Organism
88
Homo sapiens
Biosample type
74
tissue
14
primary cell
Organ
831
pancreas
717
liver
683
connective tissue
491
adipose tissue
436
epithelium
390
heart
351
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
88
musculature of body
69
blood
69
bodily fluid
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
70
hg19
53
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_slims!
3D chromatin structure
lab.title!
Bing Ren, UCSD
month_released!
May, 2022
organ_slims!
eye
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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