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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
2
total RNA-seq
Assay category
111
DNA binding
2
Transcription
Target of assay
61
histone
61
histone modification
transcription factor
50
control
34
broad histone mark
27
narrow histone mark
15
RNA binding protein
3
chromatin remodeller
Date released
665
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
305
August, 2021
302
October, 2019
214
June, 2019
168
July, 2018
162
November, 2017
129
February, 2023
115
May, 2019
100
July, 2019
74
April, 2019
73
September, 2018
66
May, 2022
61
October, 2018
58
November, 2019
54
March, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
6
December, 2018
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
113
bam
97
fastq
62
bigWig
60
bed narrowPeak
47
bigBed narrowPeak
15
bed bed3+
2
tsv
Organism
113
Homo sapiens
Biosample type
76
tissue
32
in vitro differentiated cells
3
stem cell
2
primary cell
Organ
43
pancreas
30
liver
19
epithelium
18
adipose tissue
18
connective tissue
10
embryo
Project
113
AMP
Genome assembly (visualization)
67
GRCh38
67
hg19
Lab
113
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
8
inconsistent control read length
assay_slims!
3D chromatin structure
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ChIP-seq
total RNA-seq
tissue
body of pancreas
24
endocrine pancreas
16
subcutaneous adipose tissue
10
liver
9
omental fat pad
8
+ See 2 more…
in vitro differentiated cells
hepatocyte
13
pancreatic endoderm
6
Hepatic endoderm
4
Posterior foregut
3
definitive endodermal cell
3
+ See 1 more…
stem cell
hESC
3
primary cell
pancreatic acinar cell
2
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