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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
9
Transcription
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
27
bigWig
19
bed narrowPeak
15
tagAlign
14
bam
13
bed broadPeak
9
tsv
6
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
bed bed3+
1
txt
Organism
47
Homo sapiens
Biosample type
44
tissue
3
primary cell
Organ
932
pancreas
785
liver
665
connective tissue
496
epithelium
490
adipose tissue
355
heart
272
kidney
253
brain
224
vasculature
220
blood vessel
159
bone element
139
artery
86
limb
69
blood
69
bodily fluid
54
eye
47
musculature of body
nerve
37
embryo
25
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
30
hg19
12
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
3D chromatin structure
lab.title!
Stephen Parker, UMich
month_released!
June, 2019
organ_slims!
nerve
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
1
psoas muscle
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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