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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
34
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
47
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
June, 2019
Available data
100
bam
83
bigWig
72
bed narrowPeak
58
tsv
23
bigBed narrowPeak
6
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
139
Homo sapiens
Biosample type
71
tissue
66
cell line
2
primary cell
Organ
717
pancreas
715
liver
660
connective tissue
490
adipose tissue
341
epithelium
315
heart
253
brain
224
vasculature
220
blood vessel
158
bone element
139
artery
86
limb
82
kidney
61
blood
61
bodily fluid
eye
47
musculature of body
43
nerve
37
embryo
25
spleen
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
139
AMP
Genome assembly (visualization)
126
GRCh38
91
hg19
Lab
139
AMP-T2D consortium
assay_slims!
3D chromatin structure
month_released!
June, 2019
organ_slims!
eye
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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