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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
5
STARR-seq
1
ATAC-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
10
Transcription
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
34
August, 2021
1
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
1
vcf
Organism
35
Homo sapiens
Biosample type
33
cell line
2
tissue
Organ
30
liver
2
kidney
2
pancreas
Project
35
AMP
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
3197
AMP-T2D consortium
343
Kyle Gaulton, UCSD
276
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
month_released!
February, 2021
organ_slims!
ureter
urinary bladder
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
total RNA-seq
STARR-seq
ATAC-seq
whole genome sequencing assay
cell line
HepG2
18
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
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