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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
12
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
41
DNA binding
15
Transcription
7
DNA accessibility
6
DNA methylation
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
February, 2021
25
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
54
bam
43
fastq
36
bigWig
15
tsv
10
bed narrowPeak
8
bigBed narrowPeak
5
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
tagAlign
Organism
71
Homo sapiens
Biosample type
69
tissue
2
primary cell
1
in vitro differentiated cells
Organ
750
pancreas
680
liver
373
epithelium
235
kidney
194
heart
140
connective tissue
87
vasculature
84
blood vessel
72
adipose tissue
68
blood
68
bodily fluid
66
brain
53
artery
52
eye
31
limb
25
embryo
22
musculature of body
20
lung
19
nerve
19
spleen
9
bone element
8
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
37
hg19
36
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
3D chromatin structure
month_released!
February, 2021
June, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
subcutaneous adipose tissue
12
5
1
1
1
omental fat pad
11
5
1
1
1
white adipose tissue
12
adipose tissue
1
1
3
3
1
subcutaneous abdominal adipose tissue
5
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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