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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
65
DNase-seq
23
total RNA-seq
7
RRBS
6
small RNA-seq
5
ATAC-seq
4
pCHi-C
4
single cell RNA-seq
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
257
DNA binding
72
DNA accessibility
33
Transcription
3D chromatin structure
8
DNA methylation
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
37
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
73
June, 2019
35
May, 2019
26
August, 2017
21
July, 2019
16
October, 2017
14
February, 2020
6
March, 2020
2
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
300
bam
287
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
66
bed bed3+
36
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
374
Homo sapiens
Biosample type
342
tissue
32
primary cell
Organ
905
pancreas
784
liver
484
epithelium
345
kidney
324
heart
283
brain
228
connective tissue
165
vasculature
159
blood vessel
112
limb
105
adipose tissue
90
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
374
AMP
Genome assembly (visualization)
270
GRCh38
232
hg19
Lab
374
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
assay_slims!
3D chromatin structure
month_released!
February, 2021
BIOSAMPLE
ASSAY
374 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
FAIRE-seq
WGBS
snATAC-seq
tissue
brain
20
14
1
1
1
skeletal muscle tissue
22
1
4
1
1
1
1
layer of hippocampus
23
muscle of leg
7
13
1
caudate nucleus
15
1
1
+ See 86 more…
primary cell
skeletal muscle satellite cell
8
1
1
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
skeletal muscle cell
2
1
1
+ See 4 more…
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