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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
35
DNase-seq
6
total RNA-seq
5
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
56
DNA binding
38
DNA accessibility
9
Transcription
3D chromatin structure
6
DNA methylation
Target of assay
48
histone
48
histone modification
29
broad histone mark
19
narrow histone mark
8
control
Date released
43
June, 2019
26
August, 2017
20
October, 2019
7
May, 2019
6
July, 2019
4
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
83
bigWig
77
bam
73
bed narrowPeak
60
bigBed narrowPeak
50
bed broadPeak
37
bigBed broadPeak
36
bed bed3+
15
tagAlign
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
tar
1
txt
Organism
111
Homo sapiens
Biosample type
77
tissue
34
primary cell
Organ
905
pancreas
784
liver
484
epithelium
345
kidney
324
heart
283
brain
228
connective tissue
165
vasculature
159
blood vessel
112
limb
105
adipose tissue
90
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
111
AMP
Genome assembly (visualization)
86
hg19
65
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
3D chromatin structure
month_released!
February, 2021
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
pCHi-C
small RNA-seq
ATAC-seq
FAIRE-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
1
adrenal gland
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
17
2
1
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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