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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
Assay category
61
DNA binding
Target of assay
389
transcription factor
114
control
104
histone modification
103
histone
82
recombinant protein
68
RNA binding protein
61
narrow histone mark
42
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
27
May, 2020
13
August, 2017
7
December, 2017
7
November, 2017
4
August, 2021
2
October, 2019
1
January, 2019
Available data
53
bigWig
52
bed narrowPeak
51
bam
40
tagAlign
20
fastq
15
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
2
bed bed3+
Organism
61
Homo sapiens
Biosample type
44
tissue
10
cell line
5
in vitro differentiated cells
2
primary cell
Organ
117
brain
73
pancreas
60
liver
49
epithelium
40
heart
33
connective tissue
26
vasculature
25
blood vessel
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
embryo
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
61
AMP
Genome assembly (visualization)
53
hg19
42
GRCh38
Lab
59
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
3D chromatin structure
month_released!
February, 2021
BIOSAMPLE
ASSAY
61 results
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Clear Filters
ChIP-seq
tissue
liver
42
right lobe of liver
2
cell line
HepG2
9
GM12878
1
in vitro differentiated cells
hepatocyte
5
primary cell
hepatocyte
2
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