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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
1
WGBS
Assay category
49
DNA binding
44
DNA accessibility
7
Transcription
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
control
15
narrow histone mark
Date released
53
October, 2019
32
June, 2019
6
February, 2021
6
May, 2019
3
February, 2020
1
July, 2019
Available data
97
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
101
Homo sapiens
Biosample type
101
tissue
Organ
871
pancreas
679
liver
647
connective tissue
486
epithelium
466
adipose tissue
370
heart
341
kidney
239
brain
209
vasculature
204
blood vessel
159
bone element
132
artery
101
limb
84
musculature of body
60
eye
55
blood
55
bodily fluid
32
nerve
30
embryo
20
lung
18
ureter
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
101
AMP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
101
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
month_released!
January, 2021
October, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
WGBS
tissue
tibial nerve
24
2
1
5
tibial artery
18
2
1
1
muscle of leg
6
13
1
muscle of arm
17
distal epiphysis of femur
1
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