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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
DNase-seq
1
WGBS
Assay category
66
DNA binding
12
DNA accessibility
7
Transcription
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
June, 2019
7
May, 2019
6
February, 2021
3
February, 2020
1
July, 2019
Available data
82
bam
60
bed narrowPeak
59
bigWig
52
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
86
Homo sapiens
Biosample type
86
tissue
Organ
933
pancreas
785
liver
665
connective tissue
496
epithelium
490
adipose tissue
355
heart
272
kidney
253
brain
224
vasculature
220
blood vessel
159
bone element
139
artery
86
limb
69
blood
69
bodily fluid
54
eye
47
musculature of body
43
nerve
37
embryo
25
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
64
GRCh38
64
hg19
Lab
86
AMP-T2D consortium
assay_slims!
3D chromatin structure
month_released!
June, 2019
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
muscle of leg
7
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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