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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
28
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
28
DNA binding
24
Transcription
3D chromatin structure
2
DNA methylation
Target of assay
162
histone
histone modification
107
narrow histone mark
55
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
15
July, 2019
12
February, 2020
9
October, 2019
4
October, 2017
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
74
bam
53
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
32
bed bed3+
26
tsv
19
tagAlign
11
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
93
Homo sapiens
Biosample type
78
tissue
15
primary cell
Organ
780
pancreas
684
liver
605
connective tissue
459
adipose tissue
418
epithelium
321
kidney
285
heart
159
bone element
146
vasculature
141
blood vessel
118
artery
93
brain
68
blood
68
bodily fluid
68
limb
58
eye
56
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
93
AMP
Genome assembly (visualization)
49
GRCh38
44
hg19
Lab
93
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
month_released!
May, 2019
target.investigated_as!
histone modification
nucleotide modification
BIOSAMPLE
ASSAY
93 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
1
2
1
Ammon's horn
1
1
1
+ See 28 more…
primary cell
choroid plexus epithelial cell
1
2
1
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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