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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
178
DNA binding
36
DNA accessibility
21
Transcription
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
79
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
October, 2017
12
February, 2020
12
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
206
bam
206
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
87
tagAlign
44
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
23
tsv
8
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
239
Homo sapiens
Biosample type
227
tissue
12
primary cell
Organ
879
pancreas
679
liver
647
connective tissue
486
epithelium
466
adipose tissue
370
heart
341
kidney
239
brain
209
vasculature
204
blood vessel
159
bone element
132
artery
limb
84
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
18
ureter
18
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
239
AMP
Genome assembly (visualization)
207
GRCh38
149
hg19
Lab
239
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_slims!
3D chromatin structure
month_released!
October, 2017
organ_slims!
limb
target.investigated_as!
control
BIOSAMPLE
ASSAY
239 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
5
14
1
1
1
layer of hippocampus
20
caudate nucleus
13
1
1
substantia nigra
14
1
temporal lobe
13
1
1
+ See 77 more…
primary cell
choroid plexus epithelial cell
2
1
1
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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