Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
82
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
100
DNA accessibility
82
DNA binding
3D chromatin structure
Target of assay
28
transcription factor
27
control
27
histone
27
histone modification
27
narrow histone mark
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
315
August, 2021
309
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
100
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
59
September, 2020
58
November, 2019
54
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
32
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
315
bam
288
bigWig
189
tsv
55
bed narrowPeak
50
tagAlign
32
fastq
28
bigBed narrowPeak
Organism
373
Homo sapiens
Biosample type
200
tissue
147
primary cell
26
cell line
Organ
194
liver
25
blood
25
bodily fluid
7
spleen
Project
328
AMP
45
T1D
Genome assembly (visualization)
288
hg19
235
GRCh38
Lab
328
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
assay_slims!
3D chromatin structure
month_released!
January, 2021
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
373 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
spleen
7
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
GM12878
25
HepG2
1
See all biosamples
Download