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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
36
total RNA-seq
29
ATAC-seq
13
ChIP-seq
Assay category
76
Transcription
29
DNA accessibility
13
DNA binding
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
712
February, 2021
399
May, 2021
357
August, 2017
302
October, 2019
282
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
91
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
52
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
December, 2019
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
59
bam
41
fastq
37
bed narrowPeak
34
bigWig
20
tsv
19
zippedFastqFolder
Organism
118
Homo sapiens
Biosample type
59
primary cell
39
tissue
15
cell line
5
in vitro differentiated cells
Organ
72
pancreas
34
epithelium
1
adipose tissue
1
connective tissue
Project
59
AMP
59
HPAP
Genome assembly (visualization)
60
GRCh38
57
hg19
Lab
59
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
21
inconsistent ontology term
assay_slims!
3D chromatin structure
month_released!
December, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
118 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
tissue
islet of Langerhans
19
19
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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