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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
60
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
pCHi-C
Assay category
79
DNA binding
66
Transcription
51
DNA accessibility
2
DNA methylation
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
8
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
2
March, 2020
Available data
154
bam
127
bigWig
112
bed narrowPeak
67
tsv
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
199
Homo sapiens
Biosample type
132
tissue
66
cell line
1
primary cell
Organ
937
pancreas
liver
683
connective tissue
epithelium
491
adipose tissue
390
heart
353
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
199
AMP
Genome assembly (visualization)
170
GRCh38
134
hg19
Lab
199
AMP-T2D consortium
assay_slims!
3D chromatin structure
organ_slims!
epithelium
liver
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the coronary artery
1
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