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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
Assay category
DNA accessibility
75
DNA binding
Target of assay
48
transcription factor
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
62
November, 2017
13
August, 2017
Available data
2844
bam
2682
bigWig
1518
tsv
1253
fastq
1252
bed narrowPeak
732
bigBed narrowPeak
392
tagAlign
txt
110
bed broadPeak
93
zippedFastqFolder
75
bigBed broadPeak
62
bed bed3+
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
8
csv
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
75
Homo sapiens
Biosample type
58
cell line
17
primary cell
Organ
58
liver
6
brain
6
epithelium
6
vasculature
blood vessel
2
vein
Project
75
AMP
Genome assembly (visualization)
75
hg19
60
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
assay_slims!!
DNA accessibility
files.file_type!
txt
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
choroid plexus epithelial cell
2
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