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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
22
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
253
DNA binding
DNA accessibility
29
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
211
histone
211
histone modification
125
narrow histone mark
86
broad histone mark
42
control
3
RNA binding protein
3
transcription factor
Date released
124
October, 2019
91
November, 2017
28
May, 2019
16
July, 2019
15
October, 2017
13
February, 2020
2
March, 2020
Available data
247
bam
215
bigWig
194
bed narrowPeak
118
bigBed narrowPeak
118
tagAlign
31
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
289
Homo sapiens
Biosample type
273
tissue
16
primary cell
Organ
773
pancreas
680
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
184
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
289
AMP
Genome assembly (visualization)
211
GRCh38
168
hg19
Lab
289
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
DNA accessibility
assay_slims!!
DNA accessibility
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
289 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
tibial nerve
35
5
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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