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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
240
ChIP-seq
152
total RNA-seq
97
single cell RNA-seq
4
Hi-C
2
small RNA-seq
Assay category
251
Transcription
240
DNA binding
DNA accessibility
4
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
control
10
transcription factor
1
chromatin remodeller
Date released
168
May, 2021
58
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
40
August, 2017
23
June, 2019
20
October, 2019
19
July, 2019
6
November, 2017
5
December, 2019
4
May, 2019
4
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
2
October, 2018
1
February, 2021
Available data
495
bigWig
463
bam
333
fastq
255
tsv
226
bed narrowPeak
98
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
495
Homo sapiens
Biosample type
1548
tissue
504
cell line
495
primary cell
246
in vitro differentiated cells
3
stem cell
Organ
180
epithelium
160
pancreas
25
connective tissue
20
vasculature
18
blood vessel
18
kidney
12
vein
10
musculature of body
9
brain
9
liver
7
heart
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
315
AMP
180
T1D
Genome assembly (visualization)
495
hg19
456
GRCh38
Lab
283
AMP-T2D consortium
212
Kyle Gaulton, UCSD
Audit category:
31
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
target.investigated_as!
control
BIOSAMPLE
ASSAY
495 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
small RNA-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
30
4
pancreatic alpha cell
7
10
12
pancreatic beta cell
7
10
12
pancreatic ductal cell
13
4
10
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