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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
113
Transcription
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
3
control
3
nucleotide modification
Date released
79
February, 2021
26
August, 2021
6
March, 2020
6
November, 2020
5
January, 2019
5
October, 2019
4
May, 2021
2
March, 2023
2
November, 2019
1
December, 2018
1
February, 2023
1
May, 2020
1
November, 2018
1
October, 2022
Available data
116
tsv
104
bigWig
103
bam
7
fastq
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
136
Homo sapiens
Biosample type
1392
tissue
409
primary cell
153
in vitro differentiated cells
140
cell line
7
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
42
epithelium
42
pancreas
22
liver
8
embryo
8
kidney
1
mammary gland
Project
138
AMP
T1D
2
community
Genome assembly (visualization)
106
hg19
104
GRCh38
Lab
116
AMP-T2D consortium
16
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
46
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
DNA binding
award.project!
T1D
BIOSAMPLE
ASSAY
140 results
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total RNA-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
31
6
1
2
1
HepG2
14
2
2
2
1
1
H1-hESC
8
EndoC-BH1
1
1
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