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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
pCHi-C
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
Assay category
DNA binding
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
3
control
Date released
14
July, 2019
12
February, 2020
4
March, 2020
1
October, 2019
Available data
28
tsv
15
bigWig
12
bam
3
bed bed3+
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
Organism
31
Homo sapiens
Biosample type
25
tissue
6
primary cell
Organ
549
pancreas
494
connective tissue
408
adipose tissue
266
epithelium
207
liver
174
heart
147
bone element
135
kidney
74
blood vessel
74
vasculature
58
artery
29
brain
23
eye
18
musculature of body
15
embryo
11
limb
10
lung
5
nerve
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
15
hg19
12
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
DNA binding
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
31 results
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total RNA-seq
pCHi-C
small RNA-seq
Hi-C
single cell RNA-seq
tissue
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
diencephalon
1
1
+ See 13 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
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