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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
DNA binding
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
16
July, 2019
12
February, 2020
2
March, 2020
1
October, 2019
Available data
26
tsv
15
bigWig
12
bam
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
31
Homo sapiens
Biosample type
24
tissue
7
primary cell
Organ
494
connective tissue
427
pancreas
410
adipose tissue
182
heart
177
liver
163
epithelium
146
bone element
76
vasculature
75
blood vessel
58
artery
31
brain
29
kidney
24
eye
22
musculature of body
15
embryo
12
limb
5
nerve
4
skeleton
3
spleen
2
intestine
2
pericardium
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
17
hg19
12
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
DNA binding
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
31 results
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total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
frontal cortex
2
1
Ammon's horn
1
1
brain
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
+ See 11 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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