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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
single cell RNA-seq
72
ChIP-seq
4
Hi-C
4
pCHi-C
4
total RNA-seq
Assay category
98
Transcription
72
DNA binding
DNA accessibility
DNA methylation
4
3D chromatin structure
Target of assay
41
histone
41
histone modification
26
control
24
broad histone mark
17
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
10
April, 2019
9
August, 2017
7
May, 2019
4
February, 2020
4
July, 2019
4
June, 2019
4
March, 2020
2
February, 2021
1
February, 2023
1
May, 2022
Available data
100
tsv
40
bed narrowPeak
40
bigWig
23
bam
4
tagAlign
Organism
178
Homo sapiens
Biosample type
172
tissue
4
primary cell
2
cell line
Organ
160
liver
159
heart
143
pancreas
135
kidney
109
brain
93
epithelium
89
bone element
88
connective tissue
59
adipose tissue
33
blood vessel
33
vasculature
26
eye
25
limb
20
musculature of body
13
artery
12
nerve
10
lung
9
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
178
AMP
Genome assembly (visualization)
202
GRCh38
hg19
Lab
138
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
assay_slims!
DNA accessibility
DNA methylation
assembly!
hg19
BIOSAMPLE
ASSAY
178 results
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single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
tissue
left cardiac atrium
18
40
heart left ventricle
18
6
1
heart right ventricle
17
2
1
right cardiac atrium
18
1
1
skeletal muscle tissue
1
9
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primary cell
cardiac fibroblast
2
skeletal muscle cell
1
skeletal muscle satellite cell
1
cell line
smooth muscle cell of the coronary artery
2
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