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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
157
ChIP-seq
17
pCHi-C
10
Hi-C
2
small RNA-seq
Assay category
436
Transcription
DNA accessibility
157
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
126
May, 2021
76
February, 2023
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
42
September, 2018
37
August, 2017
33
May, 2022
23
June, 2019
22
July, 2019
15
October, 2019
14
February, 2021
9
November, 2017
5
December, 2019
4
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
395
bam
387
bigWig
309
fastq
252
tsv
114
bed narrowPeak
52
zippedFastqFolder
49
tagAlign
36
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
620
Homo sapiens
Biosample type
1966
tissue
620
primary cell
551
cell line
295
in vitro differentiated cells
9
stem cell
Organ
231
epithelium
201
pancreas
26
connective tissue
20
vasculature
17
blood vessel
16
kidney
15
brain
10
vein
9
heart
9
liver
8
musculature of body
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
287
AMP
180
HPAP
152
T1D
1
ITG
Genome assembly (visualization)
393
hg19
364
GRCh38
Lab
272
AMP-T2D consortium
180
Klaus Kaestner, Upenn
167
Kyle Gaulton, UCSD
1
ITG
Audit category:
29
inconsistent ontology term
4
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
DNA methylation
organ_slims!
bodily fluid
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
620 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
pCHi-C
Hi-C
small RNA-seq
primary cell
monocyte
54
41
1
Langerhans cell
85
pancreatic alpha cell
52
12
10
1
pancreatic beta cell
21
12
10
1
exocrine cell
39
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