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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
total RNA-seq
23
ChIP-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
DNA accessibility
23
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
660
February, 2021
318
November, 2017
224
May, 2021
217
August, 2021
214
May, 2020
187
August, 2017
168
July, 2018
100
February, 2023
85
October, 2019
73
July, 2019
71
November, 2018
63
December, 2017
60
May, 2022
57
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
46
October, 2018
35
December, 2018
28
May, 2019
27
September, 2018
25
February, 2020
25
November, 2019
23
February, 2018
23
January, 2019
20
April, 2019
14
November, 2020
12
June, 2019
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
5
May, 2024
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
3
October, 2017
1
March, 2019
Available data
123
tsv
57
txt
26
bigWig
23
bam
11
bed narrowPeak
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
216
Homo sapiens
Biosample type
159
tissue
41
cell line
16
in vitro differentiated cells
1
primary cell
Organ
92
heart
60
kidney
29
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
217
AMP
Genome assembly (visualization)
30
hg19
15
GRCh38
Lab
124
AMP-T2D consortium
58
Katalin Susztak, Upenn
33
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
DNA methylation
files.file_type!
bed bedMethyl
target.investigated_as!
histone
BIOSAMPLE
ASSAY
217 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
15
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
7
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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