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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
DNA accessibility
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
50
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
May, 2023
Available data
435
bam
417
bigWig
402
tsv
38
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
1
bed broadPeak
1
bedpe bed3+
Organism
477
Homo sapiens
Biosample type
475
tissue
2
primary cell
1
in vitro differentiated cells
Organ
755
liver
720
pancreas
643
connective tissue
477
adipose tissue
348
epithelium
306
heart
247
brain
187
kidney
175
vasculature
172
blood vessel
147
bone element
92
artery
77
limb
60
blood
60
bodily fluid
55
musculature of body
40
nerve
37
embryo
28
eye
21
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
478
AMP
Genome assembly (visualization)
418
hg19
417
GRCh38
Lab
478
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
DNA methylation
organ_slims!
ureter
BIOSAMPLE
ASSAY
478 results
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total RNA-seq
ChIP-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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