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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
total RNA-seq
ChIP-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
Assay category
180
Transcription
DNA accessibility
3
3D chromatin structure
DNA sequencing
Date released
658
February, 2021
193
August, 2021
168
July, 2018
146
May, 2020
132
May, 2021
104
August, 2017
101
May, 2022
100
July, 2019
90
February, 2023
56
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
39
October, 2019
27
September, 2018
25
February, 2020
22
November, 2019
15
February, 2018
14
November, 2020
10
December, 2019
9
April, 2020
8
November, 2018
5
January, 2018
5
January, 2019
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
2
October, 2018
1
December, 2018
1
March, 2019
Available data
123
tsv
57
txt
15
bam
15
bigWig
2
bed bed3+
2
bedpe bed3+
2
hic
Organism
192
Homo sapiens
Biosample type
159
tissue
25
cell line
9
in vitro differentiated cells
Organ
92
heart
60
kidney
12
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
2
artery
2
epithelium
1
adipose tissue
Project
193
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
116
AMP-T2D consortium
58
Katalin Susztak, Upenn
17
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
DNA sequencing
assay_title!
ChIP-seq
award.project!
T1D
BIOSAMPLE
ASSAY
193 results
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single cell RNA-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
adipocyte
1
osteoblast
1
See all biosamples
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