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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
6
MeRIP-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
484
DNA binding
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
61
November, 2018
28
December, 2018
26
August, 2021
24
October, 2019
18
January, 2019
14
November, 2019
9
February, 2021
6
February, 2023
6
November, 2020
2
March, 2023
1
March, 2020
1
May, 2021
1
October, 2022
Available data
570
bam
517
bigWig
427
fastq
392
bed narrowPeak
353
bigBed narrowPeak
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
Organism
508
Homo sapiens
Biosample type
1232
tissue
542
primary cell
512
cell line
220
in vitro differentiated cells
6
stem cell
Organ
384
liver
60
blood
60
bodily fluid
39
pancreas
25
epithelium
12
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
503
AMP
7
T1D
2
community
Genome assembly (visualization)
411
hg19
348
GRCh38
Lab
475
AMP-T2D consortium
24
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
35
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA accessibility
DNA sequencing
files.file_type!
tsv
organ_slims!
skin of body
BIOSAMPLE
ASSAY
512 results
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Clear Filters
ChIP-seq
MeRIP-seq
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
cell line
HepG2
378
2
2
1
1
GM12878
60
EndoC_BH1
15
6
1
3
2
2
1
Panc1
13
1
smooth muscle cell of the coronary artery
6
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