Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
ChIP-seq
6
pCHi-C
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
404
DNA binding
Transcription
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
259
November, 2017
58
November, 2018
28
December, 2018
18
August, 2021
15
January, 2019
15
October, 2019
12
November, 2019
6
February, 2021
6
February, 2023
5
March, 2020
3
November, 2020
1
May, 2020
1
May, 2021
1
October, 2022
Available data
400
bigWig
392
bed narrowPeak
390
bam
360
fastq
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
16
tagAlign
5
tsv
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
426
Homo sapiens
Biosample type
893
tissue
428
cell line
332
primary cell
176
in vitro differentiated cells
7
stem cell
Organ
324
liver
54
blood
54
bodily fluid
28
pancreas
20
epithelium
9
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
mammary gland
Project
421
AMP
7
T1D
Genome assembly (visualization)
398
hg19
348
GRCh38
Lab
404
AMP-T2D consortium
16
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA accessibility
Transcription
assay_title!
STARR-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
428 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
HepG2
318
2
2
1
1
GM12878
54
EndoC_BH1
13
1
3
3
2
2
1
Panc1
7
1
smooth muscle cell of the coronary artery
4
+ See 8 more…
See all biosamples
Download