Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
Transcription
92
DNA binding
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
83
control
9
transcription factor
3
histone
3
histone modification
3
nucleotide modification
2
RNA binding protein
2
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
66
November, 2017
13
August, 2021
11
October, 2019
6
February, 2023
6
November, 2020
4
February, 2021
4
March, 2020
4
November, 2018
3
January, 2019
3
November, 2019
1
December, 2018
1
May, 2020
1
October, 2022
Available data
466
bam
422
fastq
413
bigWig
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
5
tsv
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
121
Homo sapiens
Biosample type
460
tissue
128
primary cell
123
cell line
103
in vitro differentiated cells
6
stem cell
Organ
78
liver
20
pancreas
12
epithelium
7
kidney
6
blood
6
bodily fluid
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
118
AMP
5
T1D
Genome assembly (visualization)
23
hg19
1
GRCh38
Lab
101
AMP-T2D consortium
11
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
Transcription
files.file_type!
bed bedMethyl
bed narrowPeak
BIOSAMPLE
ASSAY
123 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
whole genome sequencing assay
cell line
HepG2
71
2
2
2
1
EndoC_BH1
2
6
1
3
2
2
1
Panc1
7
1
GM12878
6
HEK293T
2
+ See 10 more…
See all biosamples
Download