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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
141
single cell RNA-seq
86
ChIP-seq
47
WGBS
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
335
Transcription
DNA accessibility
86
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
151
May, 2021
86
February, 2023
74
May, 2022
56
September, 2020
47
September, 2023
41
May, 2020
18
February, 2021
9
April, 2020
4
March, 2020
4
March, 2023
3
October, 2022
Available data
178
bam
178
bigWig
132
fastq
98
tsv
93
zippedFastqFolder
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
490
Homo sapiens
Biosample type
419
primary cell
66
tissue
7
cell line
1
stem cell
Organ
112
pancreas
103
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
227
HPAP
206
T1D
47
KPMP
9
LungMap
3
community
1
ITG
Genome assembly (visualization)
181
hg19
179
GRCh38
Lab
227
Klaus Kaestner, Upenn
202
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
4
AMP-T2D consortium
3
Anna Gloyn, Oxford
1
ITG
Audit category:
inconsistent ontology term
3
audit script error
assay_slims!
DNA accessibility
assay_title!
CRISPR RNA-seq
audit.ERROR.category!
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
493 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
+ See 34 more…
tissue
kidney
47
islet of Langerhans
7
2
lung
9
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
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