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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
247
total RNA-seq
187
single cell RNA-seq
47
WGBS
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
275
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
34
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
June, 2019
27
July, 2019
27
October, 2019
20
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
502
bigWig
491
bam
349
fastq
258
tsv
223
bed narrowPeak
96
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
6
hic
4
bedpe bed3+
hdf5
3
cool
2
csv
Organism
792
Homo sapiens
Biosample type
2148
tissue
792
primary cell
586
cell line
321
in vitro differentiated cells
9
stem cell
Organ
309
epithelium
275
pancreas
30
connective tissue
28
vasculature
24
blood vessel
24
kidney
19
vein
13
brain
13
musculature of body
10
heart
6
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
368
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
514
hg19
457
GRCh38
Lab
333
AMP-T2D consortium
231
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
assay_title!
CRISPR RNA-seq
files.file_type!
hdf5
month_released!
August, 2021
BIOSAMPLE
ASSAY
792 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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