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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
4
ChIP-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
10
Transcription
4
DNA binding
3
3D chromatin structure
DNA accessibility
1
DNA sequencing
Target of assay
4
control
Date released
22
August, 2021
1
March, 2019
Available data
14
bed narrowPeak
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
23
Homo sapiens
Biosample type
20
cell line
3
tissue
Organ
17
liver
3
pancreas
2
kidney
Project
23
AMP
Genome assembly (visualization)
2
hg19
Lab
800
AMP-T2D consortium
227
Klaus Kaestner, Upenn
73
Kyle Gaulton, UCSD
61
Katalin Susztak, Upenn
47
KPMP
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bigWig
BIOSAMPLE
ASSAY
23 results
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total RNA-seq
STARR-seq
ChIP-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
4
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
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