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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
141
single cell RNA-seq
47
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
290
Transcription
DNA accessibility
47
DNA methylation
4
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
86
February, 2023
74
May, 2022
56
September, 2020
47
September, 2023
45
May, 2020
18
February, 2021
9
April, 2020
7
March, 2020
4
March, 2023
3
October, 2022
Available data
132
fastq
93
zippedFastqFolder
53
tsv
50
bam
50
bigWig
4
hic
3
bed narrowPeak
3
bedpe bed3+
3
cool
Organism
346
Homo sapiens
Biosample type
273
primary cell
65
tissue
10
cell line
1
stem cell
Organ
115
pancreas
106
epithelium
47
kidney
9
lung
Project
AMP
227
HPAP
62
T1D
47
KPMP
9
LungMap
3
community
1
ITG
Genome assembly (visualization)
53
hg19
51
GRCh38
Lab
227
Klaus Kaestner, Upenn
55
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
7
AMP-T2D consortium
3
Anna Gloyn, Oxford
1
ITG
Audit category:
7
inconsistent ontology term
3
audit script error
assay_slims!
DNA accessibility
assay_title!
CRISPRi RNA-seq
award.project!
AMP
files.file_type!
ibed
month_released!
May, 2021
BIOSAMPLE
ASSAY
349 results
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total RNA-seq
single cell RNA-seq
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
CRISPR RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
B cell
2
+ See 26 more…
tissue
kidney
47
islet of Langerhans
7
2
lung
9
cell line
EndoC_BH1
2
3
1
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
See all biosamples
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