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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
Assay category
DNA accessibility
66
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
August, 2017
2
October, 2019
Available data
2692
bam
2529
bigWig
1492
tsv
1169
bed narrowPeak
978
fastq
745
bigBed narrowPeak
313
tagAlign
157
txt
93
zippedFastqFolder
75
bed broadPeak
66
bigBed broadPeak
31
bed bed3+
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
66
Homo sapiens
Biosample type
58
cell line
8
primary cell
Organ
58
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
66
AMP
Genome assembly (visualization)
66
hg19
50
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
13
inconsistent control read length
assay_slims!
DNA accessibility
assay_title!
CRISPRi RNA-seq
month_released!
August, 2017
organ_slims!
nerve
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
cell line
HepG2
58
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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