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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
85
single cell RNA-seq
84
ChIP-seq
47
WGBS
16
pCHi-C
Hi-C
Assay category
273
Transcription
DNA accessibility
84
DNA binding
47
DNA methylation
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
76
February, 2023
74
May, 2022
56
September, 2020
45
May, 2020
18
February, 2021
Available data
180
bam
180
bigWig
132
fastq
102
tsv
93
zippedFastqFolder
84
bed narrowPeak
84
tagAlign
Organism
420
Homo sapiens
Biosample type
420
primary cell
66
tissue
11
cell line
2
stem cell
Organ
100
epithelium
100
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
224
HPAP
196
T1D
Genome assembly (visualization)
180
GRCh38
180
hg19
Lab
224
Klaus Kaestner, Upenn
196
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
Capture-C
Hi-C
award.project!
AMP
BIOSAMPLE
ASSAY
420 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
pancreatic alpha cell
42
31
exocrine cell
39
pancreatic beta cell
11
16
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