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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
687
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1124
Transcription
687
DNA binding
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
554
histone
554
histone modification
296
narrow histone mark
258
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
222
October, 2019
193
May, 2020
159
August, 2021
118
July, 2018
115
May, 2019
108
August, 2017
82
November, 2017
80
April, 2019
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
25
February, 2020
21
May, 2022
20
November, 2019
16
October, 2018
14
February, 2023
9
April, 2020
6
October, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1655
bam
1542
bigWig
1075
tsv
589
bed narrowPeak
371
bigBed narrowPeak
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1970
Homo sapiens
Biosample type
1971
tissue
451
primary cell
209
in vitro differentiated cells
202
cell line
6
stem cell
Organ
499
connective tissue
440
adipose tissue
257
liver
247
heart
239
pancreas
224
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
46
musculature of body
40
nerve
32
artery
25
eye
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1905
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1264
GRCh38
1212
hg19
Lab
1780
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
7
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
7
audit script error
assay_slims!
DNA accessibility
assay_title!
Capture-C
files.file_type!
fastq
month_released!
January, 2019
BIOSAMPLE
ASSAY
1971 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
liver
167
78
1
1
2
1
1
islet of Langerhans
195
43
4
3
1
4
kidney
49
27
64
1
1
bone element
84
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