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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
ChIP-seq
80
single cell RNA-seq
52
WGBS
13
Hi-C
10
MeRIP-seq
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
486
Transcription
DNA accessibility
54
DNA methylation
13
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
89
August, 2017
47
May, 2022
43
February, 2023
41
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
22
November, 2019
16
September, 2020
11
July, 2019
10
November, 2020
7
March, 2020
5
October, 2019
4
August, 2021
4
February, 2020
4
November, 2018
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2019
Available data
422
tsv
421
bam
416
bigWig
263
fastq
41
zippedFastqFolder
7
bed bedMethyl
7
bedpe bed3+
7
bigBed bedMethyl
7
hic
6
txt
3
cool
1
bed bed3+
1
bedpe
1
hdf5
Organism
566
Homo sapiens
Biosample type
318
tissue
205
primary cell
44
cell line
Organ
555
pancreas
497
connective tissue
410
adipose tissue
272
epithelium
210
liver
182
heart
147
bone element
139
kidney
76
vasculature
75
blood vessel
58
artery
31
brain
24
eye
22
musculature of body
15
embryo
12
limb
10
lung
5
nerve
4
skeleton
3
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
455
AMP
103
HPAP
9
T1D
Genome assembly (visualization)
420
hg19
416
GRCh38
Lab
439
AMP-T2D consortium
103
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
47
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
assay_title!
ChIP-seq
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
567 results
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total RNA-seq
single cell RNA-seq
WGBS
Hi-C
MeRIP-seq
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
278
6
3
4
1
body of pancreas
3
2
2
pancreas
2
2
1
1
1
gastrocnemius medialis
1
4
tibial nerve
5
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primary cell
pancreatic alpha cell
52
12
31
1
pancreatic beta cell
21
12
16
1
pancreatic acinar cell
4
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 4 more…
cell line
EndoC_BH1
33
1
6
2
1
Panc1
1
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